What plugs were you running? I had BR7ef's in there gapped at .028" and it was not happy under a lot of load. Thinking they are too cold. 2nd gear pulls at 6 psi were fine but when in 3rd (th400) it would hesitate so badly i would have to abort the pull- wouldnt go past 3,800. Afrs were 11.5, 14# of timing, 6# of boost and holding . I picked up some TR6's that im going to gap down to .025" to see if that helps. Wonder if I'm fighting the 110 octane fuel?
EDIT: I'm also going to try increasing the dwell to 3.5ms and see what that does (up from 3 - LS2 coils).