I'm not sure about the FD, but the cable driven speedo on the FC generates a pulsed 12V signal to the cruise control computer. This pulsed 12V signal is sento to the cruise control computer via green/red wire (FC!) to the cruise control computer. I believe the cruise control computer just tries to maintain whatever frequency of pulsed 12V you engage the switch at. You may be able to supply a pulsed 12V from the Autometer speedo or trans VSS and maintain the cruise control functionality.
FWIW, I was able to do the opposite of what you're trying to do. I used the pulsed 12V cruise wire from the factory speedometer and sent it to my Megasquirt ECU to capture vehicle speed for data logging/tuning. Again, this was on an FC.