Well back onto brakes - After doing more research over the past few days I think I have came up with a better package. Using a six piston front with 13" rotor - 1.62/1.12/1.12 pistons - and the factory rear mustang caliper with 13" rotor - 1.496 piston- I create a better bias front to rear, it looks better and the major plus is I retain the park brake. Rear calipers are really cheap and readily available as well. Looking at schematics and pictures online it looks like I can at the least adapt the stock mazda park brake cable as the positioning of the brake actuator is pretty close to the mazda's. This caliper is the one Im planning for the front -
http://www.wilwood.com/Calipers/CaliperProd.aspx?itemno=120-6584-FS - Still planning on using FTB's rotors front and rear.
I ordered the mustang calipers and will have them this afternoon to see what is needed to make this work. If this looks like a go and wilwood says that the 1.10" thick rotor is compatible with the caliper I have chosen I will order all the parts next week and hopefully be building brakes that weekend.

If something looks off let me know or just thoughts in general about it.
Leg input in pounds: 60
Master cylinder diameter: 1.0625
Front line PSI (un boosted): 451.141
Front caliper pist dia 1: 1.62
Front caliper pist dia 2: 1.12
Front caliper pist dia 3: 1.12
Total front piston area *: 4.032
Front pad Cf: .54
Front rotor diameter: 13
Front pad radial hieght **: 2.43
Front Rotor Torque In.lbs.: 5190.737
Rear line PSI (un boosted): 451.141
Rear caliper pist dia 1: 1.496
Total rear piston area*: 1.758
Rear pad Cf: .54
Rear rotor diameter: 13
Rear pad radial height: 2.03
Rear rotor torque In. lbs.: 2348.744
Percentage of front Bias: 0.680