The 411 is a few lines. I've posted it many times before.
The ONLY cars that use a "Cobra" style 8.8 housing are-
Lincoln Mark VIII - alumnium case, 28 spline, these will generally have 3.08 or 3.27 gears, possibly LSD
V8 and SC (I believe) IRS Tbirds - iron case, 28 spline, these will generally have 3.08 or 3.27 gears, possibly LSD
99 Cobra - aluminium case, 28 spline, these will generally have 3.27 and LSD (you will need 03 Cobra inner CVs for these)
01 Cobra - aluminium case, 31 spline, these will generally have 3.27 and LSD (you will need 03 Cobra inner CVs for these)
03/04 Cobra - aluminium case, 31 spline, these will generally have 3.55 and carbon clutch LSD
*All of the above diffs can be used for the Samberg FD cradle, or anything requiring a "Cobra" diff.
Rear cover is the same for all "Cobra" style diffs. Inner CVs need to be matched with diff... 28 spline, 31 spline etc. Aside from that inner CVs are interchangable into the diff itself. Actual axle shaft splines for tripod MAY be different between T Bird, Mark VIII and Cobra models. Beware of this when purchasing axle shafts.
Explorer/Aviator/ Mountainer
02-05 - single front mount housing, aluminium, 31 spline, 3.55 or 3.73, possibly LSD
06-10 - dual front mount housing, aluminium, 31 spline, 3.55 or 3.73, possibly LSD *This is NOT a "Cobra" style housing.
*Only the 02-05 single front mount housing can be used with the Ronin FC 8.8 conversion.
All IRS Explorer diffs use same rear cover. All Explorer diffs use unique inner CVs. They are not interchangable with "Cobra" style diffs and vice versa. Explorer axle shaft splines are different from Cobra axle shaft splines. Be aware of this when purchasing axle shafts.
Quick axle decoding -
Most modern 8.8 diffs will have a tag similar to this on it. You can figure out what gear ratio and if it has limited slip.

Looking at the lower line, we see 3L73 8 8 That means 3.73 gear, limited slip, 8.8. If there is no L, you don't have limited slip. The 3 73 is the actual gear ratio, so it may be 3 55, 3 27, 3 08 etc. on the tag. 8 8 means it is an 8.8 axle. That is really only important when looking at Tbirds, as some of them did not have 8.8s